Changes in version 0.99.4                        

  - Fixed restore() / ol_checkout() for snapshotted objects: object
    components (those stored in __ol_objects, e.g. an adapter's manifest
    or metadata) were previously handled with the table-restore path and
    failed with "Failed to restore table 'object...'", so a restore
    rolled back only the table components of an adapter-managed object.
    ol_checkout() now restores an object by re-inserting its snapshotted
    version as the new latest version, so a full object (including
    adapter-managed containers) round-trips through snap() / restore().

                       Changes in version 0.99.3                        

  - Standardized optional agent-context capture on the package-specific
    OL_PROMPT_ID, OL_AGENT_RUN_ID, and OL_AGENT_NAME environment
    variables.
  - Replaced tool-specific labels in tests and documentation with
    neutral software-agent terminology.

                       Changes in version 0.99.2                        

  - Declared the optional xcms and Chromatograms adapter dependencies
    and aligned dependency-contract tests with the adapters' runtime
    behavior.
  - Made path-normalization testing portable across Unix-like and
    Windows hosts.
  - Expanded the package description and removed the premature package
    citation; a publication citation will be added when a stable DOI is
    available.

                       Changes in version 0.99.1                        

  - Prepared the public Bioconductor submission snapshot.
  - Isolated test storage in a temporary directory for reliable package
    checks.
  - Preserved callers' random-number state in evaluation helpers.
  - Completed missing evaluation-topic return-value documentation.

                       Changes in version 0.99.0                        

  - Bioconductor submission preparation release.
  - Added reproducibility hardening:
      - strict reproducibility mode (ol_enable_strict_repro_mode(),
        lake_strict_on())
      - automatic Git/renv/session metadata capture on commit/snapshot
      - optional clean-git guard and snapshot validation checks
  - Added Bioconductor preflight tooling:
      - tools/check_bioc.sh
      - tools/check_bioc_readiness.R
      - GitHub Actions workflow .github/workflows/bioc-check.yml
  - Expanded documentation and submission checklist in
    inst/bioc/BIOCONDUCTOR_SUBMISSION.md.